Welcome to the INDRA Network Service documentation!

This documentation covers a tutorial and the modules of the INDRA Network Search and is part of a broader set of INDRA derived applications. To read more about INDRA, see the homepage, the documentation and the project on github.

Contents:

• Network Search Web UI
  • Source and Target
    • Autocompleting source/target inputs
  • Detailed Search Options - General Options
    • Path Length
    • Node Blacklist
    • Max Paths
    • Signed Search
    • Highest Degree Node Culling Frequency
    • Belief Cutoff
    • Allowed Statement Types
    • Allowed Node Namespaces
    • Checkboxes
  • Detailed Search Options - Context and Weighted Search Options
    • Unweighted
    • Belief Weighted
    • DepMap z-score weighted
    • Mesh Context
  • Detailed Search Options - Open Search Options
    • Terminal Namespaces
    • Max Children Per Node (Unweighted Search)
    • Depth Limit (Unweighted Search)
  • Timeout
  • Result Categories
    • Common Parents
    • Shared Targets
    • Shared Regulators
    • Path Results
  • Detailed Results
  • The Graphs Used
• INDRA Network Search Modules Reference
  • Autocomplete (indra_network_search.autocomplete.autocomplete)
  • Data Models (indra_network_search.data_models)
  • Rest Models (indra_network_search.data_models.rest_models)
  • Pathfinding (indra_network_search.pathfinding.pathfinding)
  • Utility Functions (indra_network_search.util)
    • Util (indra_network_search.util.curation_cache)
  • Query Classes (indra_network_search.query)
  • Query Handler (indra_network_search.query_handler)
  • Rest API (indra_network_search.rest_api)
  • Rest API Utilities (indra_network_search.rest_util)
  • Result Handlers (indra_network_search.result_handler)
  • Search API (indra_network_search.search_api)

Indices and tables

• Index

• Module Index

• Search Page